Read data (.dat file) with Pandas

How do I read the following (two columns) data (from a .dat file) with Pandas

TIME                      XGSM
2004 006 01 00 01 37 600  1
2004 006 01 00 02 32 800  5
2004 006 01 00 03 28 000  8
2004 006 01 00 04 23 200  11
2004 006 01 00 05 18 400  17

Column separator is (at least) 2 spaces.

I tried

df = pd.read_table("test.dat", sep="s+", usecols=['TIME', 'XGSM'])
print df

But it prints

   TIME  XGSM
   2004     6
   2004     6
   2004     6
   2004     6
   2004     6

Answers:

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Method 1

You can use parameter usecols with order of columns:

import pandas as pd
from pandas.compat import StringIO

temp=u"""TIME             XGSM
2004 006 01 00 01 37 600  1
2004 006 01 00 02 32 800  5
2004 006 01 00 03 28 000  8
2004 006 01 00 04 23 200  11
2004 006 01 00 05 18 400  17"""
#after testing replace StringIO(temp) to filename
df = pd.read_csv(StringIO(temp), 
                 sep="s+", 
                 skiprows=1, 
                 usecols=[0,7], 
                 names=['TIME','XGSM'])

print (df)
   TIME  XGSM
0  2004     1
1  2004     5
2  2004     8
3  2004    11
4  2004    17

Edit:

You can use separator regex – 2 and more spaces and then add engine='python' because warning:

ParserWarning: Falling back to the ‘python’ engine because the ‘c’ engine does not support regex separators (separators > 1 char and different from ‘s+’ are interpreted as regex); you can avoid this warning by specifying engine=’python’.

import pandas as pd
from pandas.compat import StringIO

temp=u"""TIME              XGSM
2004 006 01 00 01 37 600   1
2004 006 01 00 02 32 800   5
2004 006 01 00 03 28 000   8
2004 006 01 00 04 23 200   11
2004 006 01 00 05 18 400   17"""
#after testing replace StringIO(temp) to filename
df = pd.read_csv(StringIO(temp), sep=r's{2,}', engine='python')

print (df)
                       TIME  XGSM
0  2004 006 01 00 01 37 600     1
1  2004 006 01 00 02 32 800     5
2  2004 006 01 00 03 28 000     8
3  2004 006 01 00 04 23 200    11
4  2004 006 01 00 05 18 400    17

Method 2

Could also try pd.read_fwf() (Read a table of fixed-width formatted lines into DataFrame):

import pandas as pd
from io import StringIO

pd.read_fwf(StringIO("""TIME                      XGSM
2004 006 01 00 01 37 600  1
2004 006 01 00 02 32 800  5
2004 006 01 00 03 28 000  8
2004 006 01 00 04 23 200  11
2004 006 01 00 05 18 400  17"""), usecols = ["TIME", "XGSM"])

#   TIME    XGSM
#0  2004    1
#1  2004    5
#2  2004    8
#3  2004    11
#4  2004    17

Method 3

I too experienced the problem while importing when there are lots of white space. I could solve by using

pd.read_fwf(file_name)

If you want to import files with fixed width text file, then read_fwf might be the solution without needing to use StringIO.

All methods was sourced from stackoverflow.com or stackexchange.com, is licensed under cc by-sa 2.5, cc by-sa 3.0 and cc by-sa 4.0