Skip to content

Magenaut

  • Home
  • Topics
    • Notes
    • Tutorial
    • Bug fixing
    • Extension
    • Server
  • Q&A
  • Privacy Policy
  • About

fasta

parsing a fasta file using a generator ( python )

August 13, 2022 by Magenaut

I am trying to parse a large fasta file and I am encountering out of memory errors. Some suggestions to improve the data handling would be appreciated. Currently the program correctly prints out the names however partially through the file I get a MemoryError

Categories Python, Q&A Tags fasta, file, parsing, python Leave a comment
  1. michealSmith07 on Is there a way to dynamically refresh the less command?August 21, 2022

    That is a very nice post. I like this post.

  2. anonymous on Fix libwacom9 dependency issue when upgrade DebianJune 27, 2022

    saved my day!! Thanks for the help…

  3. sreedhar on Fix libwacom9 dependency issue when upgrade DebianMay 10, 2022

    Thanks its working

  4. saintnick on Fix libwacom9 dependency issue when upgrade DebianMay 10, 2022

    remove libwacom2 worked for me as well

  5. ranafoul on Fix libwacom9 dependency issue when upgrade DebianApril 22, 2022

    apt remove libwacom2 helped on kali 2022.01. gr8

.net ajax asp.net asp.net-core asp.net-mvc asp.net-mvc-3 asp.net-mvc-4 asp.net-web-api bash c# command-line css custom-post-types custom-taxonomy dataframe dictionary django entity-framework functions gridview html iis javascript jquery json linux list matplotlib numpy pandas php plugin-development plugins posts python python-2.7 python-3.x security shell shell-script sql string vb.net webforms wp-query

© 2026 Magenaut • Built with GeneratePress