Stopword removal with NLTK

I am trying to process a user entered text by removing stopwords using nltk toolkit, but with stopword-removal the words like ‘and’, ‘or’, ‘not’ gets removed. I want these words to be present after stopword removal process as they are operators which are required for later processing text as query. I don’t know which are the words which can be operators in text query, and I also want to remove unnecessary words from my text.